INSTALL

Installation from pypi is recommended:

pip install scgenome

We also recommend installing scgenome into a virtual environment using virtualenv. To create a fresh environment with scgenome use the following steps:

virtualenv venv
source venv/bin/activate
pip install scgenome

To install from source, clone this repo and use the following steps in the repo directory:

virtualenv venv
source venv/bin/activate
python setup.py develop

Docker containers are available at https://quay.io/repository/mondrianscwgs/scgenome