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scgenome 0.0 documentation
INSTALL
CONCEPTS
API
scgenome.pp.read_dlp_hmmcopy
scgenome.pp.convert_dlp_hmmcopy
scgenome.pp.convert_dlp_signals
scgenome.pp.read_bam_bin_counts
scgenome.pp.read_snv_genotyping
scgenome.pp.filter_cells
scgenome.pp.calculate_filter_metrics
scgenome.tl.cluster_cells
scgenome.tl.aggregate_clusters_hmmcopy
scgenome.tl.aggregate_clusters
scgenome.tl.sort_cells
scgenome.tl.compute_umap
scgenome.tl.pca_loadings
scgenome.tl.create_bins
scgenome.tl.count_gc
scgenome.tl.mean_from_bigwig
scgenome.tl.read_ensemble_genes_gtf
scgenome.tl.aggregate_genes
scgenome.tl.prune_leaves
scgenome.tl.align_cn_tree
scgenome.tl.ad_concat_cells
scgenome.pl.plot_cn_profile
scgenome.pl.plot_cell_cn_matrix
scgenome.pl.plot_cell_cn_matrix_fig
scgenome.pl.plot_gc_reads
scgenome.pl.plot_tree_cn
Gallery
Copy Number Heatmaps
Cell Copy Number Plots
Explore PCA
.rst
.pdf
scgenome.tl.prune_leaves
scgenome.tl.prune_leaves
#
scgenome.tl.
prune_leaves
(
tree
,
f
)
#