scgenome.pp.read_dlp_hmmcopy

scgenome.pp.read_dlp_hmmcopy(alignment_results_dir, hmmcopy_results_dir, annotation_results_dir, sample_ids=None, additional_hmmcopy_reads_cols=None)

Read hmmcopy results from the DLP pipeline.

Parameters:

• alignment_results_dir (str) – dlp pipeline alignment results directory

• hmmcopy_results_dir (str) – dlp pipeline hmmcopy results directory

• annotation_results_dir (str) – dlp pipeline annotation results directory

• sample_ids (list) – sample ids to load

• additional_hmmcopy_reads_cols (list) – per bin metrics to load

Returns:

An instantiated AnnData Object.

Return type:

AnnData