INSTALL
===================================

Installation from pypi is recommended:

.. code-block::

    pip install scgenome

We also recommend installing scgenome into a virtual environment using
virtualenv.  To create a fresh environment with scgenome use the following
steps:

.. code-block::

    virtualenv venv
    source venv/bin/activate
    pip install scgenome

To install from source, clone this repo and use the following steps in
the repo directory:

.. code-block::

    virtualenv venv
    source venv/bin/activate
    python setup.py develop

Docker containers are available at https://quay.io/repository/mondrianscwgs/scgenome