Index A | C | F | M | P | R | S A ad_concat_cells() (in module scgenome.tl) aggregate_clusters() (in module scgenome.tl) aggregate_clusters_hmmcopy() (in module scgenome.tl) aggregate_genes() (in module scgenome.tl) align_cn_tree() (in module scgenome.tl) C calculate_filter_metrics() (in module scgenome.pp) cluster_cells() (in module scgenome.tl) compute_umap() (in module scgenome.tl) convert_dlp_hmmcopy() (in module scgenome.pp) convert_dlp_signals() (in module scgenome.pp) count_gc() (in module scgenome.tl) create_bins() (in module scgenome.tl) F filter_cells() (in module scgenome.pp) M mean_from_bigwig() (in module scgenome.tl) module scgenome scgenome.pl scgenome.pp scgenome.tl P pca_loadings() (in module scgenome.tl) plot_cell_cn_matrix() (in module scgenome.pl) plot_cell_cn_matrix_fig() (in module scgenome.pl) plot_cn_profile() (in module scgenome.pl) plot_gc_reads() (in module scgenome.pl) plot_tree_cn() (in module scgenome.pl) prune_leaves() (in module scgenome.tl) R read_bam_bin_counts() (in module scgenome.pp) read_dlp_hmmcopy() (in module scgenome.pp) read_ensemble_genes_gtf() (in module scgenome.tl) read_snv_genotyping() (in module scgenome.pp) S scgenome module scgenome.pl module scgenome.pp module scgenome.tl module sort_cells() (in module scgenome.tl)