Welcome to Scgenome!
===================================

scgenome is scalable python toolkit for analyzing single-cell whole genome
data built on `anndata <https://anndata.readthedocs.io>`_ and inspired by
`scanpy <https://scanpy.readthedocs.io>`_. scgenome includes preprocessing,
visualization, and clustering functionality and can be used to analyze
copy number, allele specific copy number, SNV and breakpoint features.

Check out the :doc:`concepts` section for further information, including
how to :doc:`install` the project.

.. note::

   This project is under active development.

Contents:


.. toctree::
   :maxdepth: 2
   :glob:

   install
   concepts
   api
   examples